MaM processes and manipulates multiple alignments of genomic sequences. MaM computes the exact locations of common repeat elements in multiple aligned sequences, provided by a variety of user identified programs databases and tables. It then graphically displays how the alignment quality varies throughout the aligned sequences, providing separate displays for the repeat and non-repeat portions.

Contact Info

Can Alkan

Manipulating Multiple Sequence Alignments via MaM and WebMaM

Alkan C, Tuzun E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8.
Journal link | PubMed ID: 15980474 |