An efficient deterministic algorithm which directly maximizes the similarity between two labeled gene trees and finds interaction partners among protein/domain families.

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Iman Hajirasouliha

Mirroring co-evolving trees in the light of their topologies

Hajirasouliha I, Schonhuth A, de Juan D, Valencia A, Sahinalp SC

Bioinformatics. 2012 May 1;28(9):1202-8
Journal link | PubMed ID: 22399677