smyRNA is a platform independent C program aiming to discover novel ncRNAs in a given genome using previously annotated ncRNAs.

Source Code

The source code for smyRNA is available and it is protected under GNU GPL.

Input

• Genome file: The input genome sequence in a single line, from the alphabet {A, T, G, C}.
• RNA positions: The positions of the RNA sequences in the genome sequence. "rnapos.txt" contains the training set and "rnapos_test.txt" contains the test set.
• Open reading Frames(ORFs): "orfs.txt", Open reading frames for output annotation only, not required for discovery.

Output

A result table; listing genome positions with high ncRNA probability.

Sample Input

E.coli K12 strain